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时间：2015-05-14 20:02
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已知bd垂直平分ac
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Join Legend
Serious alignment problem, requires review.
Zero, or more than one, overlaps
Half dove-tail &50 bp
Alignment identity &98%
Alignment length &50 bp
&2 gaps, each gap &25 bp, not marked as an SSR
&0 gaps, each gap &50 bp, not marked as an SSR
&0 gaps, each gap &500 bp, not marked as an SSR
&0 gaps, each gap &500 bp, marked as an SSR
Minor alignment problem.
Exactly one overlap
Half dove-tail &0 bp and <=50bp
Alignment identity &99.1%
Alignment length &2000 bp
&0 gaps, each gap &25 bp, not marked as an SSR
&0 gaps, each gap &50 bp, not marked as an SSR
&0 gaps, each gap &500 bp, not marked as an SSR
&0 gaps, each gap &500 bp, marked as an SSR
Excellent alignment, meets all defined criteria.
Exactly one RuleInfo
Half dove-tail &=0 bp
Alignment identity &=99.1%
Alignment length &=2000 bp
&=0 gaps, each gap &25 bp, not marked as an SSR
&=0 gaps, each gap &50 bp, not marked as an SSR
&=0 gaps, each gap &500 bp, not marked as an SSR
&=0 gaps, each gap &500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.
Curator Links
Alignment for AC and AC
Mismatches = 0, Gaps = 0, Length = 26157
Percent identity = 100%
Score = 5.185e+04 bits (26157), Expect = 0
6 BAC and 13 Fosmid bridging clones.
6 BAC and 13 Fosmid concordant clones.
0 BAC and 0 Fosmid discordant clones.
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TypePoint1Point2Orient1Orient2CuratorCommentTimeIdAlignmentReleases
Switch Points
A126158-+chenhcTaxid 10090 chrom 1 Primary assembly 16:49:03.800540897140GRCm38, MGSCv37
IdTypeDateWhodidComment
12150ImportOldDb09/06/:00f_old_db
12151ReSetShortOvlp09/04/:48dbo
164846CreateSwitchPt11/20/:03chenhctpf_builder 1.6
Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date//GCC401-Release64/lib
Accession%idPosition (strand) Accession%idPosition (strand)
C3H-146A23AC99.75%pos 48919 (R-) AC99.87%pos 98568 (F-) C3H-179B19&AC99.72%pos 21320 (F+) &AC99.72%pos 4838 (F-) C3H-195C19AC99.82%pos 93511 (R-) AC99.29%pos 92647 (F-) C3H-195K7&AC99.49%pos 136315 (F-) C3H-212G2AC99.87%pos 151178 (R+) &C3H-241O9AC99.61%pos 68047 (R+) AC99.06%pos 180153 (F-) C3H-25K20AC99.41%pos 141536 (R-) AC99.87%pos 11430 (F+) &AC99.87%pos 14728 (F-) C3H-2E4AC99.61%pos 157134 (R+) &C3H-84C8AC99.47%pos 45274 (R-) AC99.74%pos 105360 (F-) CH29-13O19AC99.62%pos 173781 (R+) &CH29-18G20AC100%pos 51864 (R-) AC99.78%pos 172819 (F-) CH29-481F5AC99.17%pos 106231 (R+) &CH29-490N11AC99.08%pos 90849 (R-) &CH29-496I20&AC99.5%pos 75317 (F-) CH29-498C23&AC99.87%pos 156685 (F+) CH29-528M12&AC99.76%pos 26179 (F+) CH29-553F19AC99.31%pos 106694 (R+) &CH29-564M5AC99.32%pos 90488 (R-) AC99.5%pos 144355 (F-) CH29-63D13AC99.15%pos 13531 (R-) &AC99.15%pos 12627 (R+) &RP23-136G13AC99.57%pos 111949 (R-) &RP23-20L20&AC99.86%pos 23257 (F-) &AC99.86%pos 2901 (F+) RP24-187O1AC100%pos 22726 (R+) &AC100%pos 3432 (R-) &RP24-251I6AC99.32%pos 61745 (R+) &RP24-256O6AC99.81%pos 60589 (R-) &RP24-284K16&AC99.86%pos 41682 (F+) RP24-333K6&AC99.47%pos 124116 (F-) RP24-400M17&AC99.07%pos 67273 (F+) RP24-66N19&AC99.08%pos 65984 (F+)
Fosmid Ends
Accession%idPosition (strand) Accession%idPosition (strand)
WI1-100I17AC100%pos 37824 (R+) AC99.85%pos 77906 (F-) WI1-1013M3&AC100%pos 165651 (F+) WI1-1283F4&AC100%pos 19576 (F+) &AC100%pos 6582 (F-) WI1-1325L13AC99.75%pos 110959 (R-) AC100%pos 73890 (F+) WI1-1395N23AC99.83%pos 142257 (R+) AC99.72%pos 183645 (F-) WI1-1429M1AC100%pos 60647 (R-) &WI1-1551A8AC100%pos 44187 (R-) &WI1-155D22AC99.42%pos 114779 (R-) AC99.61%pos 75047 (F+) WI1-1577F9AC100%pos 60647 (R-) AC100%pos 21020 (F+) &AC100%pos 5138 (F-) WI1-158J8&AC99.62%pos 192835 (F+) WI1-158M24&AC99.83%pos 192833 (F+) WI1-1601O22AC100%pos 167760 (R+) &WI1-1601P3AC100%pos 167760 (R+) &WI1-1661D10&AC99.74%pos 151737 (F+) WI1-1686N4AC100%pos 5931 (R+) AC100%pos 47703 (F-) AC100%pos 20227 (R-) &WI1-1687C17AC100%pos 171147 (R-) AC100%pos 135041 (F+) WI1-169M15AC100%pos 98373 (R+) AC99.12%pos 142134 (F-) WI1-1774I10AC100%pos 170692 (R-) AC100%pos 129332 (F+) WI1-1801P18AC100%pos 21773 (R-) &AC100%pos 4385 (R+) &WI1-1887D18AC99.81%pos 141093 (R+) AC99.58%pos 180931 (F-) WI1-1932O4AC99.74%pos 180930 (R-) AC100%pos 140363 (F+) WI1-1938J19AC100%pos 129200 (R+) AC100%pos 166684 (F-) WI1-1949D20AC100%pos 107485 (R+) AC100%pos 149960 (F-) WI1-1974C6AC99.77%pos 137014 (R-) AC100%pos 98845 (F+) WI1-198N7AC100%pos 85987 (R+) AC99.67%pos 127368 (F-) WI1-199C21AC99.83%pos 135177 (R-) AC100%pos 95299 (F+) WI1-2071D2AC99.63%pos 132127 (R-) &WI1-2071F2AC99.56%pos 132127 (R-) &WI1-2080C4AC99.64%pos 59293 (R-) AC100%pos 17559 (F+) &AC100%pos 8599 (F-) WI1-2080J20AC99.51%pos 59312 (R-) AC99.4%pos 17576 (F+) &AC99.4%pos 8582 (F-) WI1-2084E1AC100%pos 45280 (R-) AC100%pos 18780 (F-) &AC100%pos 7378 (F+) WI1-2099I2AC100%pos 73986 (R+) AC100%pos 118025 (F-) WI1-2110F3AC100%pos 135177 (R-) AC100%pos 97490 (F+) WI1-2110I22AC99.85%pos 123631 (R-) AC99.82%pos 85905 (F+) WI1-2115G3&AC99.44%pos 141069 (F+) WI1-2140J1AC100%pos 112264 (R+) AC99.23%pos 149196 (F-) WI1-2144I24AC99.71%pos 46466 (R-) AC100%pos 17559 (F-) &AC100%pos 8599 (F+) WI1-2146G21&AC99.85%pos 175902 (F+) WI1-2146I23AC100%pos 57868 (R-) AC100%pos 6390 (F-) &AC100%pos 19768 (F+) WI1-2151P16&AC100%pos 131246 (F+) WI1-2154G12AC100%pos 79512 (R+) AC100%pos 119601 (F-) WI1-2154G15AC100%pos 72074 (R-) AC100%pos 35787 (F+) WI1-2158B14AC100%pos 46161 (R+) AC99.78%pos 91135 (F-) WI1-2196D13AC100%pos 65488 (R-) &WI1-2197K6AC99.36%pos 179014 (R-) AC100%pos 138026 (F+) WI1-2221I4AC100%pos 157004 (R-) AC99.85%pos 118463 (F+) WI1-2226K6AC100%pos 109589 (R+) AC100%pos 148814 (F-) WI1-2227L20&AC99.55%pos 117840 (F+) WI1-2247O19AC100%pos 153311 (R-) AC99.84%pos 116426 (F+) WI1-2252O20AC99.65%pos 177855 (R-) AC99.68%pos 143387 (F+) WI1-2292E16AC100%pos 89856 (R+) AC100%pos 126747 (F-) WI1-2331B9AC99.82%pos 48846 (R+) AC100%pos 87023 (F-) WI1-2334A11AC99.02%pos 143544 (R-) AC100%pos 103779 (F+) WI1-2346L17AC99.4%pos 9003 (R-) AC100%pos 55657 (F-) AC99.4%pos 17155 (R+) &WI1-2363B16AC100%pos 65409 (R-) AC100%pos 3308 (F-) &AC100%pos 22850 (F+) WI1-2513A17AC100%pos 50231 (R-) AC100%pos 18624 (F-) &AC100%pos 7534 (F+) WI1-2555C10AC100%pos 108318 (R+) AC100%pos 145667 (F-) WI1-2588H22&AC100%pos 115706 (F+) WI1-2591D5AC100%pos 160577 (R+) &WI1-261G24AC100%pos 172833 (R-) AC100%pos 133370 (F+) WI1-26F6AC100%pos 45392 (R-) AC99.35%pos 9012 (F+) &AC99.35%pos 17146 (F-) WI1-2787B7&AC100%pos 151548 (F+) WI1-2796P22AC100%pos 61905 (R+) AC100%pos 100563 (F-) WI1-2826N3AC100%pos 31371 (R-) AC99.7%pos 36738 (F-) WI1-2828H13&AC100%pos 170805 (F+) WI1-2847M7AC100%pos 72113 (R+) AC99.77%pos 114798 (F-) WI1-284K18AC99.53%pos 173309 (R+) &WI1-2863C19AC99.65%pos 126184 (R+) &WI1-290K7AC100%pos 60887 (R+) &WI1-407O21AC100%pos 113697 (R-) AC99.84%pos 73208 (F+) WI1-53E8&AC99.47%pos 172760 (F+) WI1-563M23AC100%pos 158086 (R-) &WI1-602D12AC100%pos 172385 (R-) AC99.74%pos 129691 (F+) WI1-755K7AC99.81%pos 138791 (R+) AC100%pos 178035 (F-) WI1-806I11&AC99.69%pos 195038 (F+) WI1-885P18AC100%pos 121431 (R-) AC99.33%pos 81511 (F+) WI1-896N21AC99.22%pos 159374 (R+) AC99.46%pos 193825 (F-) WI1-900N16AC99.67%pos 53592 (R-) AC100%pos 14232 (F-) AC99.83%pos 53592 (R-) AC100%pos 14232 (F-) &AC100%pos 11926 (F+) &AC100%pos 11926 (F+) WI1-926P3AC99.63%pos 90508 (R+) AC99.84%pos 127531 (F-) WI1-94A23AC99.84%pos 173691 (R-) AC100%pos 132397 (F+)
hAT-Blackjack
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
TcMar-Tigger
TcMar-Mariner
hAT-Tip100
IAPLTR1_Mm
ORR1A3-int
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
TcMar-Tigger
RLTR20C2_MM
RLTR20A3_MM
RLTR17B_Mm
RLTR17B_Mm
RLTR51A_Mm
RLTR31D_MM
RLTR31D_MM
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-Charlie
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
TcMar-Tigger
hAT-Tip100
IAPLTR1_Mm
IAPLTR1_Mm
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
MamGypLTR1d
MamGypLTR2b
MLTR31C_MM
MLTR18A_MM
MLTR18A_MM
RLTR20C1_MM
RLTR20C2_MM
RLTR20A3_MM
MLTR31D_MM
RLTR17B_Mm
RLTR17D_Mm
RLTR17D_Mm
RLTR31D_MM
